ARS Finder

ARS Candidate Finder

1. Upload genome FASTA file

2. AT-rich or GC-rich regions Choose region type Minimum percentage Window size (bp) Step size (bp) Maximum score for this feature

3. Motif or regex search Search by Enter one motif or regex per line Score for each match Maximum score for this feature

4. AT or GC run length Score rules

Example: 0-9:5, 10-15:10, 16+:20

Maximum score for this feature

5. Gap between AT or GC runs Score rules

Example: 0-5:20, 6-10:10, 11+:5

Maximum score for this feature

6. Output sequence Extra bases on each side